A Model of Thermally Activated Molecular Transport: Implementation in a Massive FPGA Cluster

In this paper, a massively parallel implementation of Boltzmann’s thermally activated molecular transport model is presented. This models allows taking into account potential energy barriers in simulations and thus modeling diffusion processes liquids. The implemented as an extension to the basic Dynamic Lattice Liquid (DLL) algorithm on ARUZ, FPGA-based simulator located at BioNanoPark Lodz. advantage approach that it does not use any exponentiation operations, minimizing resource usage allowing one perform containing up 4,608,000 nodes.